PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G025400.1.p
Common NameGLYMA_01G025400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 364aa    MW: 40351.9 Da    PI: 6.8815
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G025400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-175099255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Glyma.01G025400.1.p 50 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 99
                         59*******.**********93....35999**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.11550107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2950106IPR001471AP2/ERF domain
PfamPF008473.9E-115099IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2150107IPR016177DNA-binding domain
SMARTSM003801.7E-3350113IPR001471AP2/ERF domain
CDDcd000184.81E-3050106No hitNo description
PRINTSPR003672.0E-95162IPR001471AP2/ERF domain
PRINTSPR003672.0E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEEAMRRLNG VAPILGPDPK ADGGVVADNP KRSSAVNKRA LREDGGGAMR YRGVRRRPWG  60
RYAAEIRDPQ SKERRWLGTF DTAEEAACAY DCAARAMRGL KARTNFVYPT SPQPSSATTE  120
HFLPNFNNSN NFHKHSVFNH HHGNRHITGS TTCFDQPHAV DFLAPRNSSS SALNMLLFRD  180
LVHSNPSLLS SSTTHNFHDQ FYSKGASTFS SLPGDDGDGS GFFSRESSDS GLLEEIVNKF  240
LPKTKPNKCE SLPKMETFRN PQEESLLLPP LVSESTLVST AQECYDDVTK KGFLKNDSLG  300
VFSSDHQGFP MQQFDAFNGF SSVQAMALGN EQIMMNHAEN CVVEDVFQYH ELLNAFAIRM  360
QNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1851106359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573022.10.0PREDICTED: ethylene-responsive transcription factor ESR2
TrEMBLK7K1E80.0K7K1E8_SOYBN; Uncharacterized protein
STRINGGLYMA01G03110.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.16e-14DORNROSCHEN-like